Most payroll disputes start in attendance. When punches, leave and overtime live in one system and salary in another, someone re-types the numbers every month, and that is where errors enter.
What flows from attendance to payroll
| Attendance data | Payroll effect |
|---|---|
| Present days | Paid days |
| Unpaid absence | Loss of pay (LOP) deduction |
| Approved leave | Paid or unpaid based on leave type |
| Weekly offs and holidays | Paid days as per policy |
| Late marks and half days | Deductions or half-day pay per rule |
| Overtime hours | Overtime pay, and ESI wage check |
| Night or shift allowance | Allowance amounts |
Three ways to connect them
- Manual: export attendance and type totals into payroll. Cheap but slow and error-prone.
- File import: upload an attendance sheet or device export. Faster but still a monthly chore.
- Built-in integration: attendance, leave and payroll share one database, so approved data flows straight into the salary run.
How it works in NexoraHRMS
Employees punch via biometric, web or mobile check-in; managers approve leave and regularisation; the payroll run reads paid days, LOP and overtime for the month, and a pre-check warns about gaps such as missing attendance. Months can be locked once approved. See attendance payroll software.
Cut-off rules to decide
- Pay cycle: calendar month or custom cut-off (for example 26th to 25th)
- Treatment of weekly offs between absent days
- Late-mark and half-day rules
- Overtime rate and approval
- Regularisation window for missed punches
Checklist before you integrate
- Employee codes match across systems
- Shift and holiday calendars are configured
- Leave policy is encoded (accrual, carry-forward, encashment)
- Approvals are done before the cut-off
- A test month is run in parallel
Related: automating monthly salary processing and payroll processing step by step.

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